The project scenarios propel the project pipeline automation. 

## Scenario supporting Connection Configuration
![scenario-connection.png](2BRdx4KtkHE2)
 **Main Scenario** 
  - [Reconfigure Connections](scenario:RECONFIGURECONNECTIONS): changes datasets connection.
  
## Scenario supporting Complete Pipeline
![scenario-pipeline.png](yTEIl3xnIFY4)
 **Main Scenario** 
 - [Complete Pipeline Build](scenario:PARTIALFLOWBUILD): ingests clinical notes into the project pipeline to generate medical codes and instantiates the code, verifying webapps and model metrics dashboard.
 
**Supporting Scenario**
 - [Pipeline: Input](scenario:PIPELINEINPUT): uploads the clinical note dataset and other prepackaged standardized biomedical vocabularies.
 - [Pipeline: Note Preparation](scenario:PIPELINENOTEPREPARATION): renders the clinical note datasets 
 - [Pipeline: Medical code embedding](scenario:PIPELINELLMICD10CMMAPPING): creates a knowledge bank and a RAG of the input biomedical vocabularies
 - [Pipeline: Medical Concept Extraction](scenario:PIPELINELLMDIAGNOSESEXTRACT): extracts clinical events and medical concepts from the clinical notes
 - [Pipeline: Note Summarization](scenario:PIPELINENOTESUMMARIZATION): generates a summary per clinical note
 - [Pipeline: Medical code mapping](scenario:PIPELINEDIAGNOSISREFERENCE): assigns biomedical vocabularies to the extracted medical concepts
 - [Dashboard: Model Metrics](scenario:DASHBOARDLLMVALIDATIONMETRICS): computes model metrics and refleshs the dashboard
 - [Restart webapp: code edit](scenario:RESTARTWEBAPPCODEEDIT): restarts the webapp backend
 - [Restart webapp: note viewer](scenario:RESTARTWEBAPPNOTEVIEWER): restarts the webapp backend
 - [Restart webapp: note summary & committed codes](scenario:RESTARTWEBAPPNOTESUMMARYCOMMITTEDCODES): restarts the webapp backend
 
## Scenario supporting Code Verifying Webapps

 **Main Scenario** 
 - [Commit edits](scenario:COMMITEDITS): saves the approved medical codes.
 - [Reset edits](scenario:RESETEDITS): reverts all changes made by the Code Editor webapp.
